Mobile genomic element diversity in world collection of safflower (Carthamus tinctorius L.) panel using iPBS-retrotransposon markers

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dc.authorid0000-0001-7237-937Xen_US
dc.authorid0000-0003-2731-2744en_US
dc.authorid0000-0002-6767-4355en_US
dc.authorid0000-0002-0637-9619en_US
dc.authorid0000-0002-7470-0080en_US
dc.authorid0000-0001-9901-7555en_US
dc.contributor.authorAli, Fawad
dc.contributor.authorYılmaz, Abdurrahim
dc.contributor.authorNadeem, Muhammad Azhar
dc.contributor.authorHabyarimana, Ephrem
dc.contributor.authorSubaşı, İlhan
dc.contributor.authorNawaz, Muhammad Amjad
dc.contributor.authorChaudhary, Hassan Javed
dc.date.accessioned2021-06-23T19:52:12Z
dc.date.available2021-06-23T19:52:12Z
dc.date.issued2019
dc.departmentBAİBÜ, Ziraat Fakültesi, Tarla Bitkileri Bölümüen_US
dc.description.abstractSafflower (Carthamus tinctorius L.) is a multipurpose crop of dry land yielding very high quality of edible oil. Present study was aimed to investigate the genetic diversity and population structure of 131 safflower accessions originating from 28 different countries using 13 iPBS-retrotransposon markers. A total of 295 iPBS bands were observed among which 275 (93.22%) were found polymorphic. Mean Polymorphism information content (0.48) and diversity parameters including mean effective number of alleles (1.33), mean Shannon's information index (0.33), overall gene diversity (0.19), Fstatistic (0.21), and inbreeding coefficient (1.00) reflected the presence of sufficient amount of genetic diversity in the studied plant materials. Analysis of molecular variance (AMOVA) showed that more than 40% of genetic variation was derived from populations. Model-based structure, principal coordinate analysis (PCoA) and unweighted pair-group method with arithmetic means (UPGMA) algorithms clustered the 131 safflower accessions into four main populations A, B, C, D and an unclassified population, with no meaningful geographical origin. Most diverse accessions originated from Asian countries including Afghanistan, Pakistan, China, Turkey, and India. Four accessions, Turkey3, Afghanistan4, Afghanistan2, and Pakistan24 were found most genetically distant and might be recommended as a candidate parents for breeding purposes. The findings of this study are most probably supported by the seven similarity centers hypothesis of safflower. This is a first study to explore the genetic diversity and population structure in safflower accessions using the iPBS-retrotransposon markers. The information provided in this work will therefore be helpful for scientists interested in safflower breeding.en_US
dc.identifier.doi10.1371/journal.pone.0211985
dc.identifier.issn1932-6203
dc.identifier.issue2en_US
dc.identifier.pmid30807571en_US
dc.identifier.scopus2-s2.0-85062043517en_US
dc.identifier.scopusqualityQ1en_US
dc.identifier.urihttps://doi.org/10.1371/journal.pone.0211985
dc.identifier.urihttps://hdl.handle.net/20.500.12491/10112
dc.identifier.volume14en_US
dc.identifier.wosWOS:000459712100009en_US
dc.identifier.wosqualityQ2en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.institutionauthorSubaşı, İlhan
dc.institutionauthorYılmaz, Abdurrahim
dc.institutionauthorNadeem, Muhammad Azhar
dc.language.isoenen_US
dc.publisherPublic Library Scienceen_US
dc.relation.ispartofPlos Oneen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectSaffloweren_US
dc.titleMobile genomic element diversity in world collection of safflower (Carthamus tinctorius L.) panel using iPBS-retrotransposon markersen_US
dc.typeArticleen_US

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