Identification of alternative oxidase encoding genes in Caulerpa cylindracea by de novo RNA-Seq assembly analysis

dc.authorid0000-0003-0097-1125en_US
dc.authorid0000-0001-8711-6169
dc.contributor.authorÜnlü, Ercan Selçuk
dc.contributor.authorÜnüvar, Ömer Can
dc.contributor.authorAydın, Meryem
dc.date.accessioned2021-06-23T19:51:16Z
dc.date.available2021-06-23T19:51:16Z
dc.date.issued2019
dc.departmentBAİBÜ, Fen Edebiyat Fakültesi, Kimya Bölümüen_US
dc.description.abstractAlternative oxidases (AOX) are defined in plants, fungi and algae. The main function of AOX proteins has been described for electron flow through electron transport chain and regulation of mitochondrial retrograde signaling pathway. The roles of AOX proteins have been characterized in reproduction and resistance against oxidative stress, cold stress, starvation, and biotic attacks. Caulerpa cylindracea is an invasive marine green alga. Although the natural habitats of the species are Australia coasts, the impact of the invasion has been monitored through the Mediterranean Sea and the Aegean Sea. C. cylindracea species have advantages against others by showing higher resistance to stress conditions such as cold, starvation, pathogen attacks and by their capability of sexual and vegetative reproduction. Comparing the advantages of C. cylindracea over the niche and defined functional roles of mitochondrial AOX proteins, it is evident that AOX proteins are likely involved in developing those advantageous skills in C. cylindracea. However, there is limited data about biochemical and molecular mechanisms that take part in stress resistance and Invasion characteristics. We aimed to identify mitochondrial alternative oxidase encoding genes in C. cylindracea while annotating whole transcriptome data for the species. Samples were collected from Seferihisailizmir. Transcriptome analysis from pooled RNA samples revealed 47,400 assembled contigs represented by 33,340 unigenes. Using standalone Blast analysis, we were able to identify two alternative oxidase encoding genes.en_US
dc.identifier.doi10.1016/j.margen.2019.03.004
dc.identifier.endpage48en_US
dc.identifier.issn1874-7787
dc.identifier.issn1876-7478
dc.identifier.pmid30922784en_US
dc.identifier.scopus2-s2.0-85063226707en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage41en_US
dc.identifier.urihttps://doi.org/10.1016/j.margen.2019.03.004
dc.identifier.urihttps://hdl.handle.net/20.500.12491/9954
dc.identifier.volume46en_US
dc.identifier.wosWOS:000474675500005en_US
dc.identifier.wosqualityQ4en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.institutionauthorÜnlü, Ercan Selçuk
dc.institutionauthorÜnüvar, Ömer Can
dc.institutionauthorAydın, Meryem
dc.language.isoenen_US
dc.publisherElsevieren_US
dc.relation.ispartofMarine Genomicsen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectSeaweeden_US
dc.subjectBioinformaticsen_US
dc.subjectTranscriptome Annotationen_US
dc.subjectAlternative Oxidasesen_US
dc.titleIdentification of alternative oxidase encoding genes in Caulerpa cylindracea by de novo RNA-Seq assembly analysisen_US
dc.typeArticleen_US

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