Magnesium- a forgotten element: Phenotypic variation and genome wide association study in Turkish common bean germplasm

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dc.authorid0000-0002-7470-0080en_US
dc.authorid0000-0003-1437-4081en_US
dc.authorid0000-0003-2731-2744en_US
dc.authorid0000-0002-1754-6320en_US
dc.authorid0000-0003-0547-9527en_US
dc.contributor.authorBaloch, Faheem Shehzad
dc.contributor.authorNadeem, Muhammad Azha
dc.contributor.authorSönmez, Ferit
dc.contributor.authorHabyarimana, Ephrem
dc.contributor.authorMustafa, Zemran
dc.contributor.authorÇiftçi, Vahdettin
dc.date.accessioned2023-09-26T12:27:47Z
dc.date.available2023-09-26T12:27:47Z
dc.date.issued2022en_US
dc.departmentBAİBÜ, Ziraat Fakültesi, Tohum Bilimi ve Teknolojisi Bölümüen_US
dc.descriptionThe authors express their gratitude to Scientific and Technological Research Council of Turkey (TUEBITAK) to FB for providing research grants for this study under the project no: TOVAG- 2015O630 and Basic Science Research Program supported this research through the National Research Foundation of Korea (NRF), funded by the Ministry of Education (2019R1A6A1A11052070).en_US
dc.description.abstractMagnesium (Mg) is the fourth most abundant element in the human body and plays the role of cofactor for more than 300 enzymatic reactions. In plants, Mg is involved in various key physiological and biochemical processes like growth, development, photophosphorylation, chlorophyll formation, protein synthesis, and resistance to biotic and abiotic stresses. Keeping in view the importance of this element, the present investigation aimed to explore the Mg contents diversity in the seeds of Turkish common bean germplasm and to identify the genomic regions associated with this element. A total of 183 common bean accessions collected from 19 provinces of Turkey were used as plant material. Field experiments were conducted according to an augmented block design during 2018 in two provinces of Turkey, and six commercial cultivars were used as a control group. Analysis of variance depicted that Mg concentration among common bean accessions was statistically significant (p < 0.05) within each environment, however genotype x environment interaction was non-significant. A moderate level (0.60) of heritability was found in this study. Overall mean Mg contents for both environments varied from 0.33 for Nigde-Dermasyon to 1.52 mg kg(-1) for Nigde-Derinkuyu landraces, while gross mean Mg contents were 0.92 mg kg(-1). At the province level, landraces from Bolu were rich while the landraces from Bitlis were poor in seed Mg contents respectively. The cluster constellation plot divided the studied germplasm into two populations on the basis of their Mg contents. Marker-trait association was performed using a mixed linear model (Q + K) with a total of 7,900 DArTseq markers. A total of six markers present on various chromosomes (two at Pv01, and one marker at each chromosome i.e., Pv03, Pv07, Pv08, Pv11) showed statistically significant association for seed Mg contents. Among these identified markers, the DArT-3367607 marker present on chromosome Pv03 contributed to maximum phenotypic variation (7.5%). Additionally, this marker was found within a narrow region of previously reported markers. We are confident that the results of this study will contribute significantly to start common bean breeding activities using marker assisted selection regarding improved Mg contents.en_US
dc.description.sponsorshipScientific and Technological Research Council of Turkey (TUBITAK) [TOVAG- 2015O630]; National Research Foundation of Korea (NRF) - Ministry of Education [2019R1A6A1A11052070]en_US
dc.identifier.citationBaloch, F. S., Nadeem, M. A., Sönmez, F., Habyarimana, E., Mustafa, Z., Karaköy, T., ... & Chung, Y. S. (2022). Magnesium-a forgotten element: phenotypic variation and genome wide association study in Turkish Common Bean Germplasm. Frontiers in Genetics, 13, 848663.en_US
dc.identifier.doi10.3389/fgene.2022.848663
dc.identifier.endpage11en_US
dc.identifier.issn1664-8021
dc.identifier.pmid35586571en_US
dc.identifier.scopus2-s2.0-85130309209en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage1en_US
dc.identifier.urihttp://dx.doi.org/10.3389/fgene.2022.848663
dc.identifier.urihttps://hdl.handle.net/20.500.12491/11747
dc.identifier.volume13en_US
dc.identifier.wosWOS:000796921800001en_US
dc.identifier.wosqualityQ2en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.institutionauthorSönmez, Ferit
dc.institutionauthorÇiftçi, Vahdettin
dc.language.isoenen_US
dc.publisherFrontiers Media SAen_US
dc.relation.ispartofFrontiers in Geneticsen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.relation.tubitak[TOVAG- 2015O630]
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectPhaseolus Vulgarisen_US
dc.subjectFood Legumeen_US
dc.subjectMg Contentsen_US
dc.subjectToleranceen_US
dc.subjectArabidopsisen_US
dc.subjectTransporteren_US
dc.titleMagnesium- a forgotten element: Phenotypic variation and genome wide association study in Turkish common bean germplasmen_US
dc.typeArticleen_US

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