Meta-analysis of sugar beet (Beta vulgaris L.) transcriptome profiles under different biotic and abiotic stress conditions

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dc.authorid0000-0003-2379-5363en_US
dc.authorid0000-0001-6262-2866en_US
dc.authorid0000-0003-0097-1125en_US
dc.contributor.authorBulut, Burak
dc.contributor.authorGürel, Songül
dc.contributor.authorÜnüvar, Ömer Can
dc.contributor.authorGürel, Ekrem
dc.contributor.authorÜnlü, Ercan Selçuk
dc.date.accessioned2024-05-22T12:56:22Z
dc.date.available2024-05-22T12:56:22Z
dc.date.issued2023en_US
dc.departmentBAİBÜ, Lisansüstü Eğitim Enstitüsü, Fen Bilimleri, Biyoloji Ana Bilim Dalıen_US
dc.description.abstractSugar beet (Beta vulgaris L.) meets the 21% of world sugar production. Soil pollution, biotic and abiotic factors in production areas greatly reduce product quantity and quality. Sugar beet responds to biotic and abiotic stresses such as drought, salt, heat, light, and infections of nematode, bacteria and fungi at the molecular level. Understanding molecular mechanisms require comprehensive genomics studies in order to control these mechanisms to increase the yield and quality. Transcriptome studies performed under stress conditions can shed light on the responses of plants at the molecular level. In addition, meta-analysis can help to find common responses under different stress conditions. In this study four different stress-related transcriptome data were used: two of them are related with biotic stress (nematode and fungi infection) and two of them are related with abiotic stress (ABA treatment and salt stress). In this study, we performed meta-analysis of studies conducted under biotic and abiotic stress conditions. Our results revealed 460 commonly regulated genes from biotic stress related data and 1031 commonly regulated genes from abiotic stress related data. Our data also showed that expression of ten genes is controlled regardless of the type of stress condition. The data can be useful for understanding the molecular aspect of adaptive stress response in sugar beet.en_US
dc.identifier.citationBulut, B., Gürel, S., Ünüvar, Ö. C., Gürel, E., Şahin, Y., Çabuk, U., & Ünlü, E. S. (2023). Meta Analysis of Sugar Beet (Beta vulgaris L.) Transcriptome Profiles Under Different Biotic and Abiotic Stress Conditions. Tropical Plant Biology, 16(3), 199-207.en_US
dc.identifier.doi10.1007/s12042-023-09344-y
dc.identifier.endpage207en_US
dc.identifier.issn1935-9756
dc.identifier.issn1935-9764
dc.identifier.issue3en_US
dc.identifier.scopus2-s2.0-85165893410en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage199en_US
dc.identifier.urihttp://dx.doi.org/10.1007/s12042-023-09344-y
dc.identifier.urihttps://hdl.handle.net/20.500.12491/12147
dc.identifier.volume16en_US
dc.identifier.wosWOS:001037123400002en_US
dc.identifier.wosqualityQ2en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.institutionauthorBulut, Burak
dc.institutionauthorGürel, Songül
dc.institutionauthorÜnlü, Ercan Selçuk
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofTropical Plant Biologyen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - İdari Personel ve Öğrencien_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectBeta Vulgarisen_US
dc.subjectSugar Beeten_US
dc.subjectRNA-Seqen_US
dc.subjectTranscriptomeen_US
dc.subjectMeta Analysisen_US
dc.subjectPlantsen_US
dc.titleMeta-analysis of sugar beet (Beta vulgaris L.) transcriptome profiles under different biotic and abiotic stress conditionsen_US
dc.typeArticleen_US

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