Analysis of genetic diversity among common bean germplasm by start codon targeted (SCoT) markers

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dc.authorid0000-0003-0490-371Xen_US
dc.authorid0000-0001-8021-2844en_US
dc.authorid0000-0003-2562-4461en_US
dc.authorid0000-0002-3603-2413en_US
dc.authorid0000-0002-3385-2520en_US
dc.contributor.authorYeken, Mehmet Zahit
dc.contributor.authorEmiralioğlu, Orkun
dc.contributor.authorÇiftçi, Vahdettin
dc.contributor.authorBayraktar, Harun
dc.contributor.authorPalacıoğlu, Gülsüm
dc.contributor.authorÖzer, Göksel
dc.date.accessioned2023-08-24T10:57:39Z
dc.date.available2023-08-24T10:57:39Z
dc.date.issued2022en_US
dc.departmentBAİBÜ, Ziraat Fakültesi, Tarla Bitkileri Bölümüen_US
dc.descriptionScientific and Technological Research Council of Turkey (TUBITAK)(Turkiye Bilimsel ve Teknolojik Arastirma Kurumu (TUBITAK)); USDA-ARS Germplasm Resources Information Network (GRIN), Research Institutes of the Republic of Turkey Ministry of Agriculture and Forestry; Bolu Abant Izzet Baysal University Scientific Research Projects Coordination Uniten_US
dc.description.abstractBackground Breeding strategies to improve modern varieties having high yield, high nutritional value and resistance to biotic and abiotic stress, etc. is very important to make up for the food deficiencies. Molecular studies as a tool in breeding programs for the characterization of germplasm have been performed with several DNA marker systems. Materials and methods In the present study, the genetic diversity of 53 common bean landraces and 22 registered varieties from Turkey, and 12 genotypes from USDA was investigated using start codon targeted (SCoT) markers for the first time worldwide. The 8 primers having stronger and more polymorphic bands were used for PCR amplification. Results The mean polymorphic band of all primers was found as 13.13. The average of polymorphic information content and resolving power values was 0.34 and 7.55, respectively. Analysis of molecular variance (AMOVA) explored the existence of higher genetic diversity within populations accounting for 92% compared to among populations variations. According to cluster analysis (UPGMA) and genetic structure based on SCoT data, accessions were separated into Andean (PopA) and Mesoamerican PopB) gene pools. Moreover, accessions were mostly placed in the same groups/subgroups according to their geographical origin. Conclusions A high level of genetic diversity was observed between the investigated accessions in this work. The findings will help to plant breeders to characterize common bean accessions.en_US
dc.description.sponsorshipScientific and Technological Research Council of Turkey (TUBITAK) [115R042, 109O163, 119R013]; USDA-ARS Germplasm Resources Information Network (GRIN), Research Institutes of the Republic of Turkey Ministry of Agriculture and Forestry; Bolu Abant Izzet Baysal University Scientific Research Projects Coordination Unit [2021.10.06.1495, 2021.10.07.1518]en_US
dc.identifier.citationYeken, M. Z., Emiralioğlu, O., Çiftçi, V., Bayraktar, H., Palacioğlu, G., & Özer, G. (2022). Analysis of genetic diversity among common bean germplasm by start codon targeted (SCoT) markers. Molecular Biology Reports, 49(5), 3839-3847.en_US
dc.identifier.doi10.1007/s11033-022-07229-z
dc.identifier.endpage3847en_US
dc.identifier.issn0301-4851
dc.identifier.issn1573-4978
dc.identifier.issue5en_US
dc.identifier.pmid35301653en_US
dc.identifier.scopus2-s2.0-85126484478en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage3839en_US
dc.identifier.urihttp://dx.doi.org/10.1007/s11033-022-07229-z
dc.identifier.urihttps://hdl.handle.net/20.500.12491/11596
dc.identifier.volume49en_US
dc.identifier.wosWOS:000770382300011en_US
dc.identifier.wosqualityQ3en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.institutionauthorYeken, Mehmet Zahit
dc.institutionauthorEmiralioğlu, Orkun
dc.institutionauthorÇiftçi, Vahdettin
dc.institutionauthorÖzer, Göksel
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofMolecular Biology Reportsen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.relation.tubitakScientific and Technological Research Council of Turkey (TUBITAK) [115R042, 109O163, 119R013]; USDA-ARS Germplasm Resources Information Network (GRIN), Research Institutes of the Republic of Turkey Ministry of Agriculture and Forestry; Bolu Abant Izzet Baysal University Scientific Research Projects Coordination Unit [2021.10.06.1495, 2021.10.07.1518]
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectGenetic Differentiationen_US
dc.subjectGenetic Diversityen_US
dc.subjectGenetic Resourcesen_US
dc.subjectPhaseolus Breedingen_US
dc.subjectPhaseolus Vulgarisen_US
dc.subjectPopulation Structureen_US
dc.titleAnalysis of genetic diversity among common bean germplasm by start codon targeted (SCoT) markersen_US
dc.typeArticleen_US

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