Global population structure of apple mosaic virus (ApMV, Genus Ilarvirus)

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dc.authorid0000-0002-5836-8030en_US
dc.authorid0000-0002-7480-922Xen_US
dc.authorid0000-0002-3589-6041en_US
dc.authorid0000-0002-2826-5444en_US
dc.contributor.authorÇelik, Ali
dc.contributor.authorMorca, Ali Ferhan
dc.contributor.authorCoşkan, Sevgi
dc.contributor.authorSantosa, Adyatma Irawan
dc.date.accessioned2024-02-14T13:19:32Z
dc.date.available2024-02-14T13:19:32Z
dc.date.issued2023en_US
dc.departmentBAİBÜ, Ziraat Fakültesi, Bitki Koruma Bölümüen_US
dc.description.abstractThe gene sequence data for apple mosaic virus (ApMV) in NCBI GenBank were analyzed to determine the phylogeny and population structure of the virus at a global level. The phylogenies of the movement protein (MP) and coat protein (CP) genes, encoded by RNA3, were shown to be identical and consisted of three lineages but did not closely correlate with those of P1 and P2, suggesting the presence of recombinant isolates. Recombination Detection Program (RDP v.4.56) detected significant recombination signal in the P1 region of K75R1 (KY883318) and Apple (HE574162) and the P2 region of Apple (HE574163) and CITH GD (MN822138). Observation on several diversity parameters suggested that the isolates in group 3 had higher divergence among them, compared to isolates in groups 1 and 2. The neutrality tests assigned positive values to P1, indicating that only this region experiencing balanced or contracting selection. Comparisons of the three phylogroups demonstrated high Fixation index (F-ST) values and confirmed genetic separation and the lack of gene flow among them. Additionally, & PLUSMN;500 bp of partial MP + 'intergenic region' + partial CP coding regions of two Turkish isolates from apple and seven from hazelnut were sequenced and determined that their phylogenetic positions fell within group 1 and 3, respectively.en_US
dc.identifier.citationÇelik, A., Morca, A. F., Coşkan, S., & Santosa, A. I. (2023). Global Population Structure of Apple Mosaic Virus (ApMV, Genus Ilarvirus). Viruses, 15(6), 1221.en_US
dc.identifier.doi10.3390/v15061221
dc.identifier.endpage14en_US
dc.identifier.issn1999-4915
dc.identifier.issue6en_US
dc.identifier.pmid37376521en_US
dc.identifier.scopus2-s2.0-85163973729en_US
dc.identifier.scopusqualityQ1en_US
dc.identifier.startpage1en_US
dc.identifier.urihttp://dx.doi.org/10.3390/v15061221
dc.identifier.urihttps://hdl.handle.net/20.500.12491/12023
dc.identifier.volume15en_US
dc.identifier.wosWOS:001017905500001en_US
dc.identifier.wosqualityQ2en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.institutionauthorÇelik, Ali
dc.language.isoenen_US
dc.publisherMDPIen_US
dc.relation.ispartofViruses-Baselen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectGene Flowen_US
dc.subjectPhylogenetic Studyen_US
dc.subjectPopulation Geneticsen_US
dc.subjectRecombination Analysisen_US
dc.subjectSelection Pressureen_US
dc.subjectTripartite Genomeen_US
dc.titleGlobal population structure of apple mosaic virus (ApMV, Genus Ilarvirus)en_US
dc.typeArticleen_US

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