Genome-wide identification and expression analysis of DGK (Diacylglycerol Kinase) genes in common bean

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dc.authorid0000-0003-0490-371Xen_US
dc.authorid0000-0002-3385-2520en_US
dc.authorid0000-0003-0547-9527en_US
dc.contributor.authorYeken, Mehmet Zahit
dc.contributor.authorÖzer, Göksel
dc.contributor.authorÇiftçi, Vahdettin
dc.date.accessioned2023-11-16T07:02:16Z
dc.date.available2023-11-16T07:02:16Z
dc.date.issued2023en_US
dc.departmentBAİBÜ, Ziraat Fakültesi, Tarla Bitkileri Bölümüen_US
dc.descriptionThis research was funded by Bolu Abant Izzet Baysal University (Project ID: 2021.10.07.1518).en_US
dc.description.abstractDiacylglycerol kinases (DGKs) are a family of enzymes that play an important functional role in various stress responses in plants by converting diacylglycerol to phosphatidic acid. In this study, genome-wide identification of DGK genes, expression analysis under non-stress in various developmental stages and under salt stress in different tissues of common bean were performed for the first time. The 6 DGK gene family members (PvDGK1, 2, 3, 5a, 5b, and 6) having conserved catalytic domains were identified by an exploration of common bean genome via multiple online databases. The protein lengths and molecular weights of PvDGKs were found between 423 and 727 amino acids (aa) and ranging from 47.31 to 81.09 kDa, respectively. Phylogenetic analysis revealed that PvDGK genes grouped into three clusters as described for known plant DGK families; cluster I (PvDGK1, 2), cluster II (PvDGK3) and cluster III (PvDGK5a, 5b, 6) genes, respectively. Quantitative real-time PCR analysis revealed that all PvDGK genes indicated divergent expression patterns in all tissues at different developmental stages under non-stress condition. Furthermore, PvDGK genes were also significantly upregulated in response to salt stress in root and leaf tissues of common bean cultivars at different time points. These results indicated the possible roles of PvDGK genes in developmental stages and salt stress in common bean. The findings herein will guide further investigations on the comprehension and functional characterization of the PvDGKs and the breeding studies to be carried out related to stress in the common bean near future.en_US
dc.description.sponsorshipBolu Abant Izzet Baysal University [2021.10.07.1518]en_US
dc.identifier.citationYeken, M. Z., Özer, G., & Çiftçi, V. (2023). Genome-Wide Identification and Expression Analysis of DGK (Diacylglycerol Kinase) Genes in Common Bean. Journal of Plant Growth Regulation, 42(4), 2558-2569.en_US
dc.identifier.doi10.1007/s00344-022-10726-x
dc.identifier.endpage2569en_US
dc.identifier.issn0721-7595
dc.identifier.issn1435-8107
dc.identifier.issue4en_US
dc.identifier.scopus2-s2.0-85135269390en_US
dc.identifier.scopusqualityQ1en_US
dc.identifier.startpage2558en_US
dc.identifier.urihttp://dx.doi.org/10.1007/s00344-022-10726-x
dc.identifier.urihttps://hdl.handle.net/20.500.12491/11841
dc.identifier.volume42en_US
dc.identifier.wosWOS:000832801000001en_US
dc.identifier.wosqualityQ1en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.institutionauthorYeken, Mehmet Zahit
dc.institutionauthorÖzer, Göksel
dc.institutionauthorÇiftçi, Vahdettin
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofJournal of Plant Growth Regulationen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectAbiotic Stressen_US
dc.subjectPhosphatidic Aciden_US
dc.subjectGene Expressionen_US
dc.subjectSalt Stressen_US
dc.subjectPhosphatidylinositol Monophosphateen_US
dc.subjectSuspension-Cultureen_US
dc.titleGenome-wide identification and expression analysis of DGK (Diacylglycerol Kinase) genes in common beanen_US
dc.typeArticleen_US

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