Genetic diversity among phytopathogenic Sclerotiniaceae, based on retrotransposon molecular markers

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dc.authorid0000-0001-6767-2539en_US
dc.authorid0000-0002-3385-2520en_US
dc.authorid0000-0003-2562-4461
dc.authorid0000-0003-4229-2673
dc.contributor.authorÖzer, Göksel
dc.contributor.authorSameeulah, Muhammad
dc.contributor.authorBayraktar, Harun
dc.contributor.authorGöre, Mehmet Erhan
dc.date.accessioned2021-06-23T19:49:08Z
dc.date.available2021-06-23T19:49:08Z
dc.date.issued2017
dc.departmentBAİBÜ, Ziraat Fakültesi, Bitki Koruma Bölümüen_US
dc.description.abstractMolecular marker systems have been widely used for determination, discrimination and population structure analysis in the Sclerotiniaceae. The usefulness of a new marker system iPBS, based on the sequences of reverse transcriptase primer binding sites in long terminal repeats retrotransposons, was investigated with 34 isolates of six species confirmed by species-specific markers. Six of the iPBS primers were found to produce highly polymorphic (98%) and very distinct species-specific band patterns. Each primer amplified, on average, 33.5 polymorphic bands that was suf.cient for species differentiation. The polymorphism information content was 0.896, indicating better discriminating power of markers,, the Shannon's information index was 0.438, and the genetic distance was 0.707 as average values. UPGMA cluster analysis based on retrotransposons divided all the isolates into three cluster and six sub-clusters in accordance with their species. Principal co-ordinate analysis also strongly confirmed this cluster pattern. The iPBS marker system was therefore a useful tool for evaluation of genetic variation at intra-and inter-species, and at the population levels for members of the Sclerotiniaceae. Furthermore, the iPBS markers could provide easy discrimination of Botrytis cinerea from Botrytis pseudocinerea.en_US
dc.identifier.doi10.14601/Phytopathol_Mediterr-20379
dc.identifier.endpage258en_US
dc.identifier.issn0031-9465
dc.identifier.issue2en_US
dc.identifier.scopus2-s2.0-85029521887en_US
dc.identifier.scopusqualityQ1en_US
dc.identifier.startpage251en_US
dc.identifier.urihttps://doi.org/10.14601/Phytopathol_Mediterr-20379
dc.identifier.urihttps://hdl.handle.net/20.500.12491/9383
dc.identifier.volume56en_US
dc.identifier.wosWOS:000410896300006en_US
dc.identifier.wosqualityQ2en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.institutionauthorÖzer, Göksel
dc.institutionauthorSameeulah, Muhammad
dc.institutionauthorGöre, Mehmet Erhan
dc.language.isoenen_US
dc.publisherMediterranean Phytopathological Unionen_US
dc.relation.ispartofPhytopathologia Mediterraneaen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectiPBSen_US
dc.subjectRetrotransposonsen_US
dc.subjectRetrotransposon Molecular Markers
dc.subjectSclerotiniaceae
dc.titleGenetic diversity among phytopathogenic Sclerotiniaceae, based on retrotransposon molecular markersen_US
dc.typeArticleen_US

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