Exploring the genetic diversity and population structure of Turkish laurel germplasm by the iPBS-retrotransposon marker system

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dc.authorid0000-0003-2731-2744en_US
dc.authorid0000-0002-0637-9619en_US
dc.authorid0000-0002-7470-0080en_US
dc.authorid0000-0001-9991-1792en_US
dc.authorid0000-0001-6534-5286en_US
dc.authorid0000-0001-6707-191Xen_US
dc.contributor.authorKarık, Ünal
dc.contributor.authorNadeem, Muhammad Azhar
dc.contributor.authorHabyarimana, Ephrem
dc.contributor.authorErcişli, Sezai
dc.contributor.authorYıldız, Mehtap
dc.contributor.authorYılmaz, Abdurrahim
dc.contributor.authorBaloch, Faheem Shehzad
dc.date.accessioned2021-06-23T19:50:46Z
dc.date.available2021-06-23T19:50:46Z
dc.date.issued2019
dc.departmentBAİBÜ, Ziraat Fakültesi, Tarla Bitkileri Bölümüen_US
dc.description.abstractLaurel is a medicinally important plant and is known to the world for its essential oil. Turkey is the main market in the laurel leaf trade by sharing about 90% of the world trade. Here we made an effort to elucidate genetic diversity and population structure of 94 Turkish laurel genotypes collected from 26 provinces and four geographical regions using inter-primer binding site (iPBS) retrotransposon markers. A total of 13 most polymorphic primers were selected which yielded 195 total bands, of which 84.10% were found polymorphic. Mean polymorphism information content (PIC) was (0.361) and diversity indices including mean effective number of alleles (1.36), mean Shannon's information index (0.35) and overall gene diversity (0.22) revealed the existence of sufficient amount of genetic diversity in the studied plant material. Most diversity was found in genotypes collected from the Mediterranean region. Analysis of molecular variance (AMOVA) revealed that most of the variation (85%) in Turkish laurel germplasm is due to differences within populations. Model-based structure, principal coordinate analysis (PCoA) and neighbor-joining algorithms were found in agreement and clustered the studied germplasm according to their collection provinces and regions. This is a very first study exploring the genetic diversity and population structure of laurel germplasm using iPBS-retrotransposon marker system. We believe that information provided in this work will be helpful for the scientific community to take more interest in this forgotten but the medicinally important plant.en_US
dc.identifier.doi10.3390/agronomy9100647
dc.identifier.issn2073-4395
dc.identifier.issue10en_US
dc.identifier.scopus2-s2.0-85074528613en_US
dc.identifier.scopusqualityQ1en_US
dc.identifier.urihttps://doi.org/10.3390/agronomy9100647
dc.identifier.urihttps://hdl.handle.net/20.500.12491/9857
dc.identifier.volume9en_US
dc.identifier.wosWOS:000498268600081en_US
dc.identifier.wosqualityQ1en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.institutionauthorNadeem, Muhammad Azhar
dc.institutionauthorYılmaz, Abdurrahim
dc.institutionauthorBaloch, Faheem Shehzad
dc.language.isoenen_US
dc.publisherMdpien_US
dc.relation.ispartofAgronomy-Baselen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectLaurus Nobilisen_US
dc.subjectMedicinal Planten_US
dc.subjectMobile Genomic Elementsen_US
dc.subjectGermplasm Characterizationen_US
dc.subjectMediterranean Regionen_US
dc.titleExploring the genetic diversity and population structure of Turkish laurel germplasm by the iPBS-retrotransposon marker systemen_US
dc.typeArticleen_US

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