Systems identification and characterization of cell wall reassembly and degradation related genes in Glycine max (L.) Merill, a bioenergy legume

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dc.authorid0000-0002-2098-7899en_US
dc.authorid0000-0002-7470-0080en_US
dc.authorid0000-0001-9901-7555en_US
dc.contributor.authorNawaz, Muhammad Amjad
dc.contributor.authorRehman, Hafiz Mamoon
dc.contributor.authorImtiaz, Muhammad
dc.contributor.authorBaloch, Faheem Shehzad
dc.contributor.authorLee, Jeong Dong
dc.date.accessioned2021-06-23T19:45:24Z
dc.date.available2021-06-23T19:45:24Z
dc.date.issued2017
dc.departmentBAİBÜ, Ziraat Fakültesi, Tarla Bitkileri Bölümüen_US
dc.description.abstractSoybean is a promising biomass resource for generation of second-generation biofuels. Despite the utility of soybean cellulosic biomass and post-processing residues in biofuel generation, there is no comprehensive information available on cell wall loosening and degradation related gene families. In order to achieve enhanced lignocellulosic biomass with softened cell walls and reduced recalcitrance, it is important to identify genes involved in cell wall polymer loosening and degrading. Comprehensive genome-wide analysis of gene families involved in cell wall modifications is an efficient stratagem to find new candidate genes for soybean breeding for expanding biofuel industry. We report the identification of 505 genes distributed among 12 gene families related to cell wall loosening and degradation. 1262 tandem duplication events contributed towards expansion and diversification of studied gene families. We identified 687 Simple Sequence Repeat markers and 5 miRNA families distributed on 316 and 10 genes, respectively. Publically available microarray datasets were used to explore expression potential of identified genes in soybean plant developmental stages, 68 anatomical parts, abiotic and biotic stresses. Co-expression networks revealed transcriptional coordination of different gene families involved in cell wall loosening and degradation process.en_US
dc.identifier.doi10.1038/s41598-017-11495-4
dc.identifier.issn2045-2322
dc.identifier.pmid28883533en_US
dc.identifier.scopus2-s2.0-85029023921en_US
dc.identifier.scopusqualityQ1en_US
dc.identifier.urihttps://doi.org/10.1038/s41598-017-11495-4
dc.identifier.urihttps://hdl.handle.net/20.500.12491/9148
dc.identifier.volume7en_US
dc.identifier.wosWOS:000409562000009en_US
dc.identifier.wosqualityQ1en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.institutionauthorBaloch, Faheem Shehzad
dc.language.isoenen_US
dc.publisherNature Publishing Groupen_US
dc.relation.ispartofScientific Reportsen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectGlycine max (L.) Merillen_US
dc.subjectBioenergy Legume
dc.subjectCell Wall
dc.titleSystems identification and characterization of cell wall reassembly and degradation related genes in Glycine max (L.) Merill, a bioenergy legumeen_US
dc.typeArticleen_US

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