Population structure of rice varieties used in Turkish rice breeding programs determined using simple-sequence repeat and inter-primer binding site-retrotransposon data

dc.authorid0000-0002-7470-0080en_US
dc.authorid0000-0001-7078-3221en_US
dc.authorid0000-0002-6522-4596en_US
dc.authorid0000-0001-5774-8990en_US
dc.authorid0000-0003-4390-5769
dc.contributor.authorCömertpay, Gönül
dc.contributor.authorBaloch, Faheem Shehzad
dc.contributor.authorDerya, Muazzez
dc.contributor.authorAndeden, Enver Ersoy
dc.contributor.authorAlsaleh, Ahmad
dc.date.accessioned2021-06-23T19:44:37Z
dc.date.available2021-06-23T19:44:37Z
dc.date.issued2016
dc.departmentBAİBÜ, Ziraat Fakültesi, Tarla Bitkileri Bölümüen_US
dc.description.abstractEffective breeding programs based on genetic diversity are needed to broaden the genetic basis of rice (Oryza sativa L.) in Turkey. In this study, 81 commercial varieties from seven countries were studied in order to estimate the genomic relationships among them using nine interprimer binding site (iPBS)-retrotransposon and 17 simple-sequence repeat (SSR) markers. A total of 59 alleles for the SSR markers and 96 bands for the iPBS-retrotransposon markers were detected, with an average of 3.47 and 10.6 per locus, respectively. Each of the varieties could be unequivocally identified by the SSR and iPBS-retrotransposon profiles. The iPBS-retrotransposon-and SSR-based clustering were identical and closely mirrored each other, with a significantly high correlation (r = 0.73). A neighbor-joining cluster based on the combined SSR and iPBS-retrotransposon data divided the rice varieties into three clusters. The population structure was determined using the STRUCTURE software, and three populations (K = 3) were identified among the varieties studied, showing that the diversity harbored by Turkish rice varieties is low. The results indicate that iPBS-retrotransposon markers are a very powerful technique to determine the genetic diversity of rice varieties.en_US
dc.identifier.doi10.4238/gmr.15017158
dc.identifier.issn1676-5680
dc.identifier.issue1en_US
dc.identifier.pmid26909982en_US
dc.identifier.scopus2-s2.0-84961741499en_US
dc.identifier.scopusqualityQ4en_US
dc.identifier.urihttps://doi.org/10.4238/gmr.15017158
dc.identifier.urihttps://hdl.handle.net/20.500.12491/9017
dc.identifier.volume15en_US
dc.identifier.wosWOS:000373880200020en_US
dc.identifier.wosqualityN/Aen_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.institutionauthorBaloch, Faheem Shehzad
dc.language.isoenen_US
dc.publisherFunpec-Editoraen_US
dc.relation.ispartofGenetics And Molecular Researchen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectRice Varietyen_US
dc.subjectRice Diversityen_US
dc.subjectSSRen_US
dc.subjectiPBS-Retrotransposonen_US
dc.subjectTurkeyen_US
dc.titlePopulation structure of rice varieties used in Turkish rice breeding programs determined using simple-sequence repeat and inter-primer binding site-retrotransposon dataen_US
dc.typeArticleen_US

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