Genome and transcriptome-wide analyses of cellulose synthase gene superfamily in soybean

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dc.authorid0000-0002-7470-0080
dc.contributor.authorNawaz, Muhammad Amjad
dc.contributor.authorRehman, Hafiz Mamoon
dc.contributor.authorBaloch, Faheem Shehzad
dc.contributor.authorIjaz, Babar
dc.contributor.authorAli, Muhammad Amjad
dc.contributor.authorKhan, Iqrar Ahmad
dc.contributor.authorLee, Jeong Dong
dc.date.accessioned2021-06-23T18:51:37Z
dc.date.available2021-06-23T18:51:37Z
dc.date.issued2017
dc.departmentBAİBÜ, Ziraat Fakültesi, Tarla Bitkileri Bölümüen_US
dc.description.abstractThe plant cellulose synthase gene superfamily belongs to the category of type-2 glycosyltransferases, and is involved in cellulose and hemicellulose biosynthesis. These enzymes are vital for maintaining cell-wall structural integrity throughout plant life. Here, we identified 78 putative cellulose synthases (CS) in the soybean genome. Phylogenetic analysis against 40 reference Arabidopsis CS genes clustered soybean CSs into seven major groups (CESA, CSL A, B, C, D, E and G), located on 19 chromosomes (except chromosome 18). Soybean CS expansion occurred in 66 duplication events. Additionally, we identified 95 simple sequence repeat makers related to 44 CSs. We next performed digital expression analysis using publically available datasets to understand potential CS functions in soybean. We found that CSs were highly expressed during soybean seed development, a pattern confirmed with an Affymatrix soybean IVT array and validated with RNA-seq profiles. Within CS groups, CESAs had higher relative expression than CSLs. Soybean CS models were designed based on maximum average RPKM values. Gene co-expression networks were developed to explore which CSs could work together in soybean. Finally, RT-PCR analysis confirmed the expression of 15 selected CSs during all four seed developmental stages. © 2017 Elsevier GmbHen_US
dc.identifier.doi10.1016/j.jplph.2017.04.009
dc.identifier.endpage175en_US
dc.identifier.issn0176-1617
dc.identifier.pmid28704793en_US
dc.identifier.scopus2-s2.0-85021914868en_US
dc.identifier.scopusqualityQ1en_US
dc.identifier.startpage163en_US
dc.identifier.urihttps://doi.org/10.1016/j.jplph.2017.04.009
dc.identifier.urihttps://hdl.handle.net/20.500.12491/3901
dc.identifier.volume215en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.institutionauthorBaloch, Faheem Shehzad
dc.language.isoenen_US
dc.publisherElsevier GmbHen_US
dc.relation.ispartofJournal of Plant Physiologyen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectCell wallen_US
dc.subjectCelluloseen_US
dc.subjectCellulose synthaseen_US
dc.subjectHemicelluloseen_US
dc.subjectSeed developmenten_US
dc.subjectSoybeanen_US
dc.titleGenome and transcriptome-wide analyses of cellulose synthase gene superfamily in soybeanen_US
dc.typeArticleen_US

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