Prunus necrotic ringspot virus in Turkey: An immigrant population

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dc.authorid0000-0002-5836-8030en_US
dc.authorid0000-0002-2826-5444en_US
dc.authorid0000-0003-4975-9459en_US
dc.authorid0000-0002-0557-6119en_US
dc.contributor.authorÇelik, Ali
dc.contributor.authorSantosa, Adyatma Irawan
dc.contributor.authorGibbs, Adrian J.
dc.contributor.authorErtunç, Filiz
dc.date.accessioned2024-02-20T07:49:30Z
dc.date.available2024-02-20T07:49:30Z
dc.date.issued2022en_US
dc.departmentBAİBÜ, Ziraat Fakültesi, Bitki Koruma Bölümüen_US
dc.description.abstractAn outbreak in northwestern Turkey of prunus necrotic ringspot virus (PNRSV, genus Ilarvirus, family Bromoviridae) was sampled in 2016-2018. Gene sequences from these isolates, together with all of the gene sequence data for this virus in the GenBank database (>300 non-recombinant coat protein (CP) genes and 20 complete genomic sequences) were analysed to determine the relationship of the Turkish PNRSV isolates to those from other parts of the world. Phylogenetic and population genetic methods independently showed that the most recent common ancestor of the world PNRSV population was probably American, not Eurasian. PNRSV has spread to Turkey on several occasions, as its CP sequences are among the terminal branches of three of the most sampled CP phylogroups. The complete PNRSV genome consists of three segments (RNA1, RNA2, and RNA3), with the larger two encoding replicases and the smallest encoding the movement protein and the CP. One quarter of the RNA1 and RNA2 genes were recombinants. The phylogenies of the CP and MP genes (i.e., different regions of RNA3) were closely correlated but did not correlate with those of RNA1 and RNA2, indicating that some of the isolates were reassortants. However, the non-reassortant ancestor could not be identified, probably because none of the complete genome sequences were from isolates from the basal CP phylogroups. Our results emphasize the importance of strict quarantine, both international and local, for the world's stone fruit crops.en_US
dc.identifier.citationÇelik, A., Santosa, A. I., Gibbs, A. J., & Ertunç, F. (2022). Prunus necrotic ringspot virus in Turkey: An immigrant population. Archives of Virology, 167(2), 553-562.en_US
dc.identifier.doi10.1007/s00705-022-05374-1
dc.identifier.endpage562en_US
dc.identifier.issn0304-8608
dc.identifier.issn1432-8798
dc.identifier.issue2en_US
dc.identifier.pmid35076793en_US
dc.identifier.scopus2-s2.0-85123468473en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage553en_US
dc.identifier.urihttp://dx.doi.org/10.1007/s00705-022-05374-1
dc.identifier.urihttps://hdl.handle.net/20.500.12491/12034
dc.identifier.volume167en_US
dc.identifier.wosWOS:000746802300001en_US
dc.identifier.wosqualityQ3en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.institutionauthorÇelik, Ali
dc.language.isoenen_US
dc.publisherSpringer Wienen_US
dc.relation.ispartofArchives of Virologyen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectEssential Oilsen_US
dc.subjectModelen_US
dc.subjectBarrieren_US
dc.titlePrunus necrotic ringspot virus in Turkey: An immigrant populationen_US
dc.typeArticleen_US

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