Genetic diversity and population structure of Saccharomyces cerevisiae isolated from Turkish sourdough by iPBS-retrotransposons markers

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dc.authorid0000-0003-2924-5434en_US
dc.authorid0000-0002-3385-2520en_US
dc.authorid0000-0001-7775-1871en_US
dc.contributor.authorAydın, Furkan
dc.contributor.authorÖzer, Göksel
dc.contributor.authorAlkan, Mehtap
dc.contributor.authorÇakır, İbrahim
dc.date.accessioned2023-08-21T09:38:14Z
dc.date.available2023-08-21T09:38:14Z
dc.date.issued2022en_US
dc.departmentBAİBÜ, Ziraat Fakültesi, Bitki Koruma Bölümüen_US
dc.descriptionScientific and Technological Research Council of Turkey (TUBITAK)(Turkiye Bilimsel ve Teknolojik Arastirma Kurumu (TUBITAK))en_US
dc.description.abstractMolecular DNA markers are valuable tools for analyzing genetic variation among yeast from different populations to reveal the genetically different autochthonous strains. In this study, we employed inter-primer binding site (iPBS) retrotransposon polymorphism to assess the genetic variation and population structure of 96 Saccharomyces cerevisiae isolates from four different regions in Turkey. The nine selected iPBS primers amplified 102 reproducible and scorable bands, of which 95.10% were polymorphic with an average of 10.78 polymorphic fragments per primer. The average polymorphism information content and the resolving power were 0.26-3.58, respectively. Analysis of molecular variance (AMOVA) revealed significant (P < 0.001) genetic differences within populations (88%) and between populations (12%). The unweighted pair group mean with arithmetic (UPGMA) dendrogram grouped 96 S. cerevisiae strains into two main clusters, where the highest probability of the data elucidating the population structure was obtained at Delta K = 2. There was not an obvious genetic discrimination of the populations according to geographical regions on UPGMA, supported by principal coordinate analysis. However, the individuals of the closer provinces in each population were more likely to group together or closely. The results indicate that iPBS polymorphism is a useful tool to reveal the genetically diverse autochthonous S. cerevisiae strains that may be important for the production of sourdough or baked goods.en_US
dc.description.sponsorshipScientific and Technological Research Council of Turkey (TUBITAK) [121O580]en_US
dc.identifier.citationAydın, F., Özer, G., Alkan, M., & Çakır, İ. (2022). Genetic diversity and population structure of Saccharomyces cerevisiae isolated from Turkish sourdough by iPBS-retrotransposons markers. Archives of Microbiology, 204(12), 693.en_US
dc.identifier.doi10.1007/s00203-022-03313-x
dc.identifier.endpage9en_US
dc.identifier.issn0302-8933
dc.identifier.issn1432-072X
dc.identifier.issue12en_US
dc.identifier.pmid36344755en_US
dc.identifier.scopus2-s2.0-85141477612en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage1en_US
dc.identifier.urihttp://dx.doi.org/10.1007/s00203-022-03313-x
dc.identifier.urihttps://hdl.handle.net/20.500.12491/11581
dc.identifier.volume204en_US
dc.identifier.wosWOS:000879771500002en_US
dc.identifier.wosqualityQ3en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.institutionauthorÖzer, Göksel
dc.institutionauthorÇakır, İbrahim
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofArchives of Microbiologyen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.relation.tubitakScientific and Technological Research Council of Turkey (TUBITAK) [121O580]
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectSourdoughen_US
dc.subjectYeasten_US
dc.subjectiPBSen_US
dc.subjectRetrotransposonsen_US
dc.subjectMarkeren_US
dc.subjectHeterogeneityen_US
dc.titleGenetic diversity and population structure of Saccharomyces cerevisiae isolated from Turkish sourdough by iPBS-retrotransposons markersen_US
dc.typeArticleen_US

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