Turkish isolates of alfalfa mosaic virus belong to a distinct lineage among global population

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dc.authoridMorca, Ali Ferhan/0000-0002-7480-922X
dc.authoridSantosa, Adyatma Irawan/0000-0002-2826-5444
dc.contributor.authorMorca, Ali Ferhan
dc.contributor.authorAkbas, Birol
dc.contributor.authorSantosa, Adyatma Irawan
dc.contributor.authorTopkaya, Serife
dc.contributor.authorCelik, Ali
dc.date.accessioned2024-09-25T19:58:36Z
dc.date.available2024-09-25T19:58:36Z
dc.date.issued2024
dc.departmentAbant İzzet Baysal Üniversitesien_US
dc.description.abstractComplete RNA3 sequences of 15 alfalfa mosaic virus (AMV) isolates sampled from Afyonkarahisar, Ankara, Konya, Tokat, Kayseri, and Nevs , ehir Provinces of T & uuml;rkiye were obtained using RT-PCR with two primer pairs designed in this study. Molecular and population analyses were performed on them together with 63 global isolates which full genome sequences available in NCBI GenBank. Phylogenetic analysis based on movement protein (MP) and coat protein (CP) regions showed unrelated isolates clustering between the constructed trees, and the new Turkish isolates were dispersed in different phylogroups. Particularly, three new Turkish potato isolates: B6, K1, and K2 occupied a divergent MP lineage, together with one alfalfa isolate from China: ZM1 NX3. S , eta, and k parameters of genetic diversity confirmed that CP were more conserved than MP sequences. The 15 new Turkish isolates shared 95.4 -100% nucleotide and 94 -100% amino acid, and 92.8 -100% nucleotide and 93.3 -100% amino acid identities among themselves at MP and CP regions, respectively. All tested populations were found to be under very strict purifying constraints (dN/dS ratios of 0.061 -0.219), and had undergone recent expansion, probably due to new mutations in their genome, according to diversity and neutrality tests. Fixation index ( F ST ) values obtained by pairwise comparisons of phylogroups were all above 0.33, suggested that the isolates clustering has been done convincingly.en_US
dc.identifier.doi10.1016/j.pmpp.2024.102263
dc.identifier.issn0885-5765
dc.identifier.scopus2-s2.0-85188546809en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.urihttps://doi.org/10.1016/j.pmpp.2024.102263
dc.identifier.urihttps://hdl.handle.net/20.500.12491/13643
dc.identifier.volume131en_US
dc.identifier.wosWOS:001216101900001en_US
dc.identifier.wosqualityN/Aen_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherAcademic Press Ltd- Elsevier Science Ltden_US
dc.relation.ispartofPhysiological And Molecular Plant Pathologyen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.snmzYK_20240925en_US
dc.subjectGenetic differentiationen_US
dc.subjectPhylogenetic analysisen_US
dc.subjectPopulation structureen_US
dc.subjectTripartite genomeen_US
dc.subjectReassortmenten_US
dc.subjectRecombinationen_US
dc.titleTurkish isolates of alfalfa mosaic virus belong to a distinct lineage among global populationen_US
dc.typeArticleen_US

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