Identification, phylogenetic analysis, and expression patterns of the SAUR gene family in loquat (Eriobotrya Japonica)

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dc.authorid0000-0001-7333-0113
dc.authorid0000-0002-5424-9106
dc.authorid0000-0002-6767-4355
dc.authorid0000-0002-9317-7520
dc.authorid0000-0002-7470-0080
dc.contributor.authorGan, Xiaoqing
dc.contributor.authorJing, Yi
dc.contributor.authorShahid, Muhammad Qasim
dc.contributor.authorHe, Yehua
dc.contributor.authorBaloch, Faheem Shahzad
dc.date.accessioned2021-06-23T18:40:07Z
dc.date.available2021-06-23T18:40:07Z
dc.date.issued2020
dc.departmentBAİBÜ, Ziraat Fakültesi, Tarla Bitkileri Bölümüen_US
dc.description.abstractSmall auxin-up RNAs (SAURs) are the most frequent and primary auxin responsive genes, and they are commonly used as early auxin-responsive markers. Until now, no SAUR gene has been identified in Eriobotrya plants. In this study, we used Arabidopsis SAUR sequences as a query to search against the loquat genome sequence. In total, we obtained 57 SAUR genes in loquat, hereafter referred to as Eriobotrya japonica SAUR (EjSAUR) genes, which ranged from 267 to 735 bp in the coding sequence with predicted proteins of 88–244 aa. A total of 47 EjSAUR genes were distributed on 11 chromosomes of the loquat genome. Based on their physical positions, 80.9% (38 of 47) of the EjSAUR genes were clustered together on the loquat chromosomes, suggesting that tandem duplicate genes might be the major mechanism for the expansion of this family. The expression analysis displayed high expression divergence among the different organs, which suggested that EjSAUR genes may play an important role in different organs. These results laid a foundation for the functional validation of EjSAUR genes in Eriobotrya plants.en_US
dc.identifier.doi10.3906/tar-1810-98
dc.identifier.endpage23en_US
dc.identifier.issn1300-011X
dc.identifier.issn1303-6173
dc.identifier.issue1en_US
dc.identifier.scopus2-s2.0-85079498939en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage15en_US
dc.identifier.trdizinid334768en_US
dc.identifier.urihttps://doi.org/10.3906/tar-1810-98
dc.identifier.urihttps://app.trdizin.gov.tr/makale/TXpNME56WTRPQT09
dc.identifier.urihttps://hdl.handle.net/20.500.12491/2972
dc.identifier.volume44en_US
dc.identifier.wosWOS:000518963300002en_US
dc.identifier.wosqualityQ2en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakTR-Dizinen_US
dc.institutionauthorBaloch, Faheem Shahzad
dc.language.isoenen_US
dc.relation.ispartofTurkish Journal of Agriculture and Forestryen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectAuxinen_US
dc.subjectSAUR
dc.subjectPhylogenetic Analysis
dc.subjectExpression Analysis
dc.subjectLoquat (Eriobotrya Japonica)
dc.titleIdentification, phylogenetic analysis, and expression patterns of the SAUR gene family in loquat (Eriobotrya Japonica)en_US
dc.typeArticleen_US

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