Comprehensive surveillance and population study on plum pox virus in Ankara Province of Turkey

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dc.authorscopusid57193531110
dc.authorscopusid57225990687
dc.authorscopusid15828966400
dc.authorscopusid57208189821
dc.authorscopusid57217302011
dc.contributor.authorCoşkan, Sevgi
dc.contributor.authorMorca, Ali Ferhan
dc.contributor.authorAkbaş, Birol
dc.contributor.authorÇelik, Ali
dc.contributor.authorSantosa, Adyatma Irawan
dc.date.accessioned2024-09-25T19:44:21Z
dc.date.available2024-09-25T19:44:21Z
dc.date.issued2022
dc.departmentAbant İzzet Baysal Üniversitesien_US
dc.description.abstractAnkara Province with its sizeable stone fruits outputs and its geographic location in the middle of Turkey might be one of the diversity centers of plum pox virus (PPV) in the country, yet the epidemiological data from there were rather limited. Multi-year extensive surveillance in all 25 districts of Ankara sampled 8131 Prunus spp. plants to be tested against PPV. DAS-ELISA detected 609 PPV positive samples (7.49%), which were all also confirmed by RT-PCR using two primer pairs to amplify P3-6K1-CI and partial NIb-CP regions. The partial genomes of 80 isolates were sequenced, then the sequences were subjected to phylogenetic and population analyses together with 170 isolates which complete genome sequences available in NCBI GenBank. The phylogenetic study showed that 73 new isolates were PPV-T, six isolates were PPV-M, and one isolate was PPV-D. The subsequent population study confirmed the interesting features of PPV with very high genetic diversities at the species level, thus it should be divided into strains that each retained much lower divergence among isolates. The obtained data also could provide new evidence to separate M, and MIs isolates into two distinct strains. Although previous studies suggested that Turkish isolates have been endemic since a long time ago in the country, the results of demographic analyses of the present study indicated that the expansions of Turkey and Ankara populations were recent, driven by relatively new mutations in their genome. © 2022, The Author(s), under exclusive licence to Deutsche Phytomedizinische Gesellschaft.en_US
dc.description.sponsorshipAnkara Directorate of Provincial Agriculture and Forestry; Ankara Metropolitan Municipality; Central Plant Protection Research Instituteen_US
dc.identifier.doi10.1007/s41348-022-00597-5
dc.identifier.endpage991en_US
dc.identifier.issn1861-3829
dc.identifier.issue4en_US
dc.identifier.scopus2-s2.0-85127222876en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage981en_US
dc.identifier.urihttps://doi.org/10.1007/s41348-022-00597-5
dc.identifier.urihttps://hdl.handle.net/20.500.12491/12785
dc.identifier.volume129en_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherSpringer Science and Business Media Deutschland GmbHen_US
dc.relation.ispartofJournal of Plant Diseases and Protectionen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.snmzYK_20240925en_US
dc.subjectDemographic studyen_US
dc.subjectGene flowen_US
dc.subjectMolecular identificationen_US
dc.subjectPhylogenetic analysisen_US
dc.subjectPopulation structureen_US
dc.subjectSelection pressureen_US
dc.titleComprehensive surveillance and population study on plum pox virus in Ankara Province of Turkeyen_US
dc.typeArticleen_US

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