Phylogeographical studies of Glycine soja: implicating the refugium during the Quaternary glacial period and large-scale expansion after the Last Glacial Maximum

dc.authoridShahid, Muhammad Qasim/0000-0002-6767-4355
dc.authoridBALOCH, Faheem Shehzad/0000-0002-7470-0080
dc.contributor.authorWang, Yunsheng
dc.contributor.authorShahid, Muhammad Qasim
dc.contributor.authorBaloch, Faheem Shehzad
dc.date.accessioned2024-09-25T19:57:29Z
dc.date.available2024-09-25T19:57:29Z
dc.date.issued2016
dc.departmentAbant İzzet Baysal Üniversitesien_US
dc.description.abstractWild soybean (Glycine soja Sieb. & Zucc.), the progenitor of cultivated soybean (Glycine max (L.) Merr.), is widely distributed in the Sino-Japanese Floristic Region (SJFR). Therefore, it is an excellent model organism to study the effect of Quaternary climatic changes on the distribution and migration of plant taxa in the SJFR. To investigate the phylogeography of G. soja, a total of 632 individuals representing 52 populations throughout the species distribution range were genotyped by using the sequencing data of a nuclear locus, AF105221, and a chloroplast locus, trnQ-rps16. We detected a total of 23 haplotypes from two loci, including five common and 18 rare haplotypes. Among them, 17 rare haplotypes were limited to Northeast Asia (Northeast China (NEC) and Korea) and the Yangzi River basin (middle and downstream of the Yangzi River (MDYR) and the eastern end of Southwest China (SWC)). Moreover, two common haplotypes were detected throughout the species distribution wide range. All the haplotypes from Japan and the Korean peninsula were also found in China. The haplotype distribution patterns of the two loci suggested that Northeast Asia (NEC and Korea) and the Yangzi River basin (MDYR and the eastern end of SWC) might have been the refugia for G. soja during the Quaternary glacial period, and G. soja expanded rapidly after the end of the Last Glacial Maximum. There was a land bridge between East China, the Korean peninsula, and Japan that permitted gene flow among populations of these regions in the ice age during the Quaternary.en_US
dc.description.sponsorshipNational Natural Science Fund [31560091]; Key Project of the Education Department of Guizhou Province [KY(2013)186]en_US
dc.description.sponsorshipThis research was supported by the National Natural Science Fund (31560091) and the Key Project of the Education Department of Guizhou Province [KY(2013)186]. The authors thank Okada Hiroshi and Naoko Ishikawa for providing Japanese samples and Chunghee Lee for providing Korean samples.en_US
dc.identifier.doi10.3906/tar-1607-30
dc.identifier.endpage838en_US
dc.identifier.issn1300-011X
dc.identifier.issn1303-6173
dc.identifier.issue6en_US
dc.identifier.startpage825en_US
dc.identifier.trdizinid214670en_US
dc.identifier.urihttps://doi.org/10.3906/tar-1607-30
dc.identifier.urihttps://search.trdizin.gov.tr/tr/yayin/detay/214670
dc.identifier.urihttps://hdl.handle.net/20.500.12491/13448
dc.identifier.volume40en_US
dc.identifier.wosWOS:000391398900003en_US
dc.identifier.wosqualityQ2en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakTR-Dizinen_US
dc.language.isoenen_US
dc.publisherTubitak Scientific & Technological Research Council Turkeyen_US
dc.relation.ispartofTurkish Journal of Agriculture And Forestryen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.snmzYK_20240925en_US
dc.subjectConservationen_US
dc.subjectphylogeographyen_US
dc.subjectPleistocene glaciationen_US
dc.subjectpopulation genetic structureen_US
dc.subjectwild soybeanen_US
dc.titlePhylogeographical studies of Glycine soja: implicating the refugium during the Quaternary glacial period and large-scale expansion after the Last Glacial Maximumen_US
dc.typeArticleen_US

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