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    Assessing genetic diversity of potato genotypes using inter-PBS retrotransposon marker system
    (Cambridge Univ Press, 2018) Demirel, Ufuk; Tındaş, İlknur; Yavuz, Caner; Baloch, Faheem Shehzad; Çalışkan, Mehmet Emin
    Having knowledge on genetic similarity and DNA profile of potato genotypes facilitates a breeder's decision for parent selection and provides accurate variety identification. Fingerprinting and identification of genetic similarity among 151 potato genotypes were achieved using an inter-primer-binding sites (iPBS) retrotransposon marker system. Our study is the first application of iPBS markers for fingerprinting and distinguishing large numbers of Solanum tuberosum genotypes. Initially, 16 potato genotypes were screened using 45 iPBS retrotransposon markers to identify polymorphisms. Seventeen of these primers were selected for fingerprinting the whole set of accessions due to strong, reproducible and polymorphic bands. The 17 iPBS primers produced 290 scorable bands of which 224 were polymorphic. The number of bands per primer ranged from 10 to 26 with an average of 17.1. The number of polymorphic bands per primer was between 6 and 21. The polymorphism percentage per primer ranged from 46.2 to 100.0% with an average of 77.2% per primer. The mean polymorphism information content (PIC) values of iPBS primers varied from 0.12 to 0.31 per primer. Genetic similarity based on Jaccard's coefficient of potato genotypes ranged from 0.61 to 0.93 with an average of 0.73. The data produced herein may be used for selection of appropriate parents and variety description in the future. The findings of the present study suggest that iPBS retrotransposons are powerful and easy DNA markers for fingerprinting the large samples of potato germplasm.
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    Insect-resistant transgenic crops: Retrospect and challenges
    (Turkiye Klinikleri Journal of Medical Sciences, 2015) Bakhsh, Allah; Khabbazi, Saber Delpasand; Baloch, Faheem Shahzada; Demirel, Ufuk; Çalışkan, Mehmet Emin
    The advent of genetic engineering has revolutionized agriculture remarkably with the development of superior insect-resistant crop varieties harboring resistance against insect pests. Bacillus thuringiensis (Bt) has been used as a main source for insect-resistant genes. In addition to Bt endotoxins, various plant lectins and other non-Bt genes from different sources have also been introduced in crop plants of economic importance. The insect-resistant crops have made a huge economic impact worldwide since their commercial release. The cultivation of insect-resistant cultivars has resulted both in increased crop productivity and in decreased environmental pollution. Although insect-resistant crops have been allowed to be commercialized following proper biosafety guidelines and procedures, still these crops face many challenges in order to be fully adopted and accepted. The degradation kinetics of Bt proteins, horizontal and vertical gene flow, effects on nontarget insects or organisms, antibiotic resistance, and some other unintended effects have been noted and discussed. Although no concrete evidence regarding any significant hazard of genetically engineered crops has been presented so far, the debate still remains intense. Impartial and professionally competent regulatory mechanisms for the evaluation of insect-resistant and other transgenic crops must be fully functionalized. The first part of this review focuses the development of different insect-resistant crops and various strategies adapted to delay resistance development in insect pests, while the second part addresses the challenges and future prospects of insect-resistant crops. © TÜBİTAK.